A [2]rotaxane capped by a cyclodextrin and a guest: formation of supramolecular [2]rotaxane polymer

A [2]rotaxane capped by a beta-cyclodextrin and a 2,4,6-trinitrophenyl group has been prepared by dissolving 6-aminocinnamoyl beta-cyclodextrin in water with 1-adamantane carboxylic acid and complexation with alpha-cyclodextrin followed by the reaction with 2,4,6-trinitrobenzene sulfonic acid sodium salt. The [2]rotaxane has been found to form supramolecular polymers by host-guest interactions.     

Designer ribozymes: programming the tRNA specificity into flexizyme

Fx3 is an artificial ribozyme with the ability to aminoacylate various tRNAs with phenylalanine and its nonnatural derivatives. Herein we report a simple strategy to build tRNA specificity into the generic Fx3, by appending to its 3'-end a tRNA-specific sequence (TSS), which is complementary to the acceptor stem of the cognate tRNA. This new designer ribozyme, referred to as Fx10, is able to recognize its cognate tRNA via a 10-base-pair interaction that is formed after the invasion of the tRNA acceptor stem by the TSS. We have demonstrated that Fx10 can aminoacylate its cognate tRNA with a high degree of specificity and also discriminate against the noncognate tRNAs. Because the tRNA specificity can be easily programmed into Fx10, it is a custom-made catalyst to generate nonnatural aminoacyl-tRNAs.     

A facile method for the synthesis of thiocarbamates: palladium-catalyzed reaction of disulfide, amine, and carbon monoxide

[reaction: see text] A new method for the synthesis of thiocarbamates has been developed. When dialkyl or diaryl disulfides were allowed to react with secondary amines and carbon monoxide in the presence of a catalytic amount of a palladium complex, the thiocarbamates were obtained in moderate to good yields. In contrast to that of secondary amines, in the reaction of a primary amine, no formation of thiocarbamate was confirmed, but urea was formed in good yield.     

Designed self-assembly of molecular necklaces

This paper reports an efficient strategy to synthesize molecular necklaces, in which a number of small rings are threaded onto a large ring, utilizing the principles of self-assembly and coordination chemistry. Our strategy involves (1) threading a molecular "bead" with a short "string" to make a pseudorotaxane and then (2) linking the pseudorotaxanes with a metal complex with two cis labile ligands acting as an "angle connector" to form a cyclic product (molecular necklace). A 4- or 3-pyridylmethyl group is attached to each end of 1,4-diaminobutane or 1,5-diaminopentane to produce the short "strings" (C4N4(2+), C4N3(2+), C5N4(2+), and C5N3(2+)), which then react with a cucurbituril (CB) "bead" to form stable pseudorotaxanes (PR44(2+), PR43(2+), PR54(2+), and PR53(2+), respectively). The reaction of the pseudorotaxanes with Pt(en)(NO(3))(2) (en = ethylenediamine) produces a molecular necklace [4]MN, in which three molecular "beads" are threaded on a triangular framework, and/or a molecular necklace [5]MN, in which four molecular "beads" are threaded on a square framework. Under refluxing conditions, the reaction with PR44(2+) or PR54(2+) yields exclusively [4]MN (MN44T or MN54T, respectively), whereas that with PR43(2+) or PR53(2+) produces exclusively [5]MN (MN43S or MN53S, respectively). The products have been characterized by various methods including X-ray crystallography. At lower temperatures, on the other hand, the reaction with PR44(2+) or PR54(2+) affords both [4]MN and [5]MN. The supermolecules reported here are the first series of molecular necklaces obtained as thermodynamic products. The overall structures of the molecular necklaces are strongly influenced by the structures of pseudorotaxane building blocks, which is discussed in detail on the basis of the X-ray crystal structures. The temperature dependence of the product distribution observed in this self-assembly process is also discussed.     

Asymmetric induction copolymerization. Cationic copolymerization of l-menthyl vinyl ether with indene and acenaphthylene

l-Menthyl vinyl ether (l-MVE) was homopolymerized and copolymerized with the monomers indene (IN) and acenaphthylene (ANp) by BF₃OEt₂ as a catalyst. The chiral menthyl substituent was cloven from the homopolymers and copolymers using dry-hydrogen bromide gas. After the removal of optically active menthyl group, poly(vinyl alcohol) (PVA) from l-MVE homopolymer was optically inactive, and copolymers (VA-IN, VA-ANp) from l-MVE-IN and l-MVE-ANp copolymers were still optically active. Hence, in the case of l-MVE homopolymer, it was concluded that asymmetric induction in the polymer main chain can only produce pseudoasymmetry. In the case of l-MVE-IN and l-MVE-ANp copolymers, it was found that asymmetric induction proceeded in the copolymer main chain and was caused by the influence of chiral menthyl group.     

Cyclocopolymerization of d-limonene with maleic anhydride

d-Limonene (Lim), a nonconjugated 1,5-diene, was copolymerized with maleic anhydride (MAn) in tetrahydrofuran with α,α′-azobisisobutyronitrile as initiator. The composition, spectral analyses, and other physical properties of the resulting copolymer and its hydrolysed product suggest that Lim readily undergoes an inter-intramolecular cyclocopolymerization with MAn, leading to a 1:2 alternating copolymer. The findings and the proposed cyclocopolymerization mechanism are consistent with participation of a charge-transfer complex of the comonomers in the propagation step. The copolymers are optically active and their CD spectra are characterized by dichroic bands attributable to electronic transitions of carbonyl or carboxylic chromophores.     

Structure of Aqueous Gallium(III) Bromide Solutions Over a Temperature Range 80–333 K by Raman Spectroscopy, X-ray Absorption Fine Structure, and X-ray Diffraction

The structure and complex formation of concentrated aqueous gallium(III) bromide (GaBr₃) solutions have been investigated over a temperature range 80–333 K by Raman spectroscopy, X-ray absorption fine structure (XAFS), and X-ray diffraction. The Raman spectra obtained at various [Br^?]/[Ga³⁺] molar ratios and temperatures have shown that complex formation between Ga³⁺ and Br^? occurs as a predominant species, with [GaBr₄]^? at [Ga³⁺] as high as 1～2 M (M = mol?dm ^?3) and [Br^?]/[Ga³⁺] ratios > ～2, and that cooling of the solutions favors the formation of the aqua Ga³⁺. The intermediate species were not seen in the Raman spectra. The XAFS data have revealed that the aqua complex has a sixfold coordination as [Ga(H₂O)₆]³⁺ with a Ga³⁺–H₂O distance of (1.96 ± 0.02) Å, whereas the [GaBr₄]^? complex has a Ga³⁺–Br^? distance of (2.33± 0.02) Å, and that vitrification of the aqueous GaBr₃ solution at liquid nitrogen temperature shifts the equilibrium toward the aqua complex. The X-ray diffraction data at different subzero temperatures have shown a tendency of decreasing Ga³⁺–Br^? and increasing Ga³⁺–H₂O interactions with lowering temperature, confirming the preference of aqua Ga³⁺ in the supercooled liquid state as well as in the glassy state. The Ga³⁺–H₂O distance of ～1.8 Å for the tetrahedral coordination was found in a 2.01 M gallium(III) bromide solution with a [Br^?]/[Ga³⁺] ratio of 3.7 and gradually increased to a value of 1.92 Å for octahedral geometry with decreasing temperature, suggesting that equilibrium shifts from [GaBr₄]^? to [Ga(H₂O)₆]³⁺ through intermediate species, [GaBr _n ]^(3?n)+ (n = 2 and 3). The Ga³⁺–Br^? and Br^?–Br^? distances within [GaBr₄]^? with an almost tetrahedral symmetry are (2.35± 0.02) and (3.82± 0.03) Å, respectively. The Ga³⁺ has the second hydration shell at (4.03± 0.03) Å and the hydration of Br^? is characterized with a Br^?–H₂O distance of (3.35± 0.02) Å at all temperatures investigated.     

Site-directed 13C solid-state NMR studies on membrane proteins: strategy and goals toward revealing conformation and dynamics as illustrated for bacteriorhodopsin labeled with [1-13C]amino acid residues

We have so far demonstrated that well-resolved and site-specifically assigned (13)C peaks as recorded by site-directed NMR study on (13)C-labeled membrane proteins can serve as a convenient probe to reveal their local conformation and dynamics. We attempted here to clarify the extent to which (13)C NMR spectra of (13)C-labeled fully hydrated bacteriorhodopsin (bR) as a typical membrane protein are visible or well resolved in the presence of inherent fluctuation motions with frequency of 10(2)-10(8) Hz, especially at the membrane surfaces. Accordingly, we estimated the relative proportion of (13)C NMR signals from the surface areas with and without peak suppression by the accelerated transverse relaxation effect by surface-bound Mn(2+) ions, which could be effective for residues within 8.7 angstroms of the membrane surface. It turned out that the experimental findings are consistent with the predicted amount of amino acid residues under consideration located within 8.7 angstroms of the surface for [1-(13)C]Val- and Ile-labeled bR and also [3-(13)C]Ala-bR. In contrast, (13)C NMR peaks from such surfaces area are almost completely or partially suppressed for [1-(13)C]Gly-, Ala-, Leu-, Phe- and Trp-labeled bR, as a result of plausible interference of the fluctuation frequency with frequency of magic angle spinning (10(4) Hz). We further assigned several (13)C NMR signals of [1-(13)C] Val-, Trp- and Ile-labeled bR on the basis of a variety of site-directed mutants with reference to those of the wild type. Further, we recorded the (13)C NMR of bR in lipid bilayers to search for the optimal conditions to be able to obtain signals with the highest peak intensities and spectral resolution. Backbone dynamics turn out to be essential for recording (13)C NMR spectra so as to escape from motional frequencies of the order of 10(4)-10(5) Hz, either in the direction of accelerated fluctuation or slowed motions in the direction of forming the 2D array.     

Theoretical studies on electronic states of Rh-C60. Possibility of a room-temperature organic ferromagnet

A possible mechanism for a ferromagnetic interaction in the rhombic (Rh) form of C60 (Rh-C60) is suggested on the basis of theoretical studies in relation to cage distortion of the C60 unit in the polymerized 2D-plane. Band structure calculations on Rh-C60 show that cage distortion leads to competition between diamagnetic and ferromagnetic states,which give rise to the possibility of thermally populating the ferromagnetic state.